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MRI physics (very useful to learn basic MR physics) : http://mriquestions.com/index.html
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Stimulus Toolbox (toolbox to generate stimuli, use their Demo. Very useful. MATLAB based): http://psychtoolbox.org/
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Stimulus Toolbox (Python): https://www.pygame.org/
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fMRI analysis (toolbox to analyze fMRI data, use GUI first, then modify the script, user friendly. MATLAB based): http://www.fil.ion.ucl.ac.uk/spm/software/spm12/
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FREESURFER (inflate brain and draw ROI, especially useful for retinotopic mapping): https://surfer.nmr.mgh.harvard.edu/
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MVPA website (machine learning pattern classification, python based): http://www.pymvpa.org/
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MRI viewer (useful to visualize fMRI activity from multiple people): https://www.nitrc.org/projects/mricron
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